PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G105500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26008.2 Da PI: 5.6616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + +kGVr++ grWv+e+r+p + +r++lg+f tae+Aa+a++ a+++l+g Brast04G105500.1.p 53 PVFKGVRRRN-PGRWVCEVREP-----HskQRIWLGTFETAEMAARAHDVAALALRG 103 579****887.9******9996.....335*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 53 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 54 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-30 | 54 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-28 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 54 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.9E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.10E-21 | 55 | 113 | No hit | No description |
PRINTS | PR00367 | 9.9E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDLGALSSDY SSGTPSPVAA DGDEGGFSTY MTVSSAPPKR RAGRTKFKET RHPVFKGVRR 60 RNPGRWVCEV REPHSKQRIW LGTFETAEMA ARAHDVAALA LRGRAATLNF ADSPRRLRAP 120 AMGASHDEIR RAAAEAAEAF MPAPDHQTQS NAAVQELAAG AAAPSAAQFL GDPYYEMGNG 180 MDFGMQGYLD MAQGMLIDPP PMAGSSAGGA GEGDDDGEIY GSPVQEVKWL PAPFVSPLFC 240 FPLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 52 | 110 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G105500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570097.1 | 1e-123 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | Q6EP77 | 1e-101 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | I1ICK8 | 1e-122 | I1ICK8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G51630.1 | 1e-123 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-34 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G105500.1.p |
Publications ? help Back to Top | |||
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