PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G103900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 285aa    MW: 31369.3 Da    PI: 8.911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G103900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-133680147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Brast04G103900.1.p 36 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 80
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-173086IPR009057Homeodomain-like
PROSITE profilePS5129415.4083185IPR017930Myb domain
TIGRFAMsTIGR015571.2E-183483IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.0E-73486IPR009057Homeodomain-like
SMARTSM007175.3E-113583IPR001005SANT/Myb domain
PfamPF002492.2E-113680IPR001005SANT/Myb domain
CDDcd001671.43E-83881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSANAPPQP PPPQMAETGD DASKKVRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK  60
IEAFVGSKTV IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA SKNEPGYTLK  120
TDSSSMLRNS GMNVAVSSWT HNSIPPIFAS SLVKEDLGAG SMGPNIFCSS SSEGPPRAWQ  180
PGETNDQINQ VPSLHIKPDF AQVYSFLGSV FDPSTNGHLQ KLKEMNPIDV ETALLLMRNL  240
SINLTSPDFE DQRKLLSSYN SASDGLELGS SRSSLLADSA LSLF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G103900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548340.0AK354834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011N06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570106.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-101RVE6_ARATH; Protein REVEILLE 6
TrEMBLI1ICM40.0I1ICM4_BRADI; Uncharacterized protein
STRINGBRADI3G51757.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-89MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]