PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G101700.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 476aa MW: 50927 Da PI: 8.3859

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G101700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.6e-17	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G W++I +++g ++t+ q++s+ qk+ Brast04G101700.2.p 61 REKWTEEEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-16	55	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.25	56	110	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-15	59	108	IPR006447	Myb domain, plants
SMART	SM00717	4.3E-13	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-9	61	101	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-14	61	104	IPR001005	SANT/Myb domain
CDD	cd00167	2.82E-10	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MASLQESAMV TDENTVAHRA AGGENAVNHH RKNHLNSDDM DLSGEDHVPK ARKPYTITKQ 60 REKWTEEEHK RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVT KESSGSSGGS 120 GSVAAAAAIQ IPPPRPKRKP AHPYPRKADE GAPAASKHGV TGLTQLERPP PVRMQSMCEQ 180 EDGSPTSVLG GGFSNNSNGS RSPLPSAAGS DEHGNNVYGS SVDGCLSSSI ATDELGFQVP 240 KTKVSERISN GDVKEASYTG SETSVLKLFG KSVVLKDSCQ KPNTSTGTPH NSGDLGTEAS 300 AETATQRSRS VPSVGAAEGG SWNPWPSTMQ QFVYFVPQPS DGFTTQSAMP WFSYNGALPG 360 ALFYQQAVAP NQHQRHHSTA ADHKVTQREG SWTGSNTAPG SAAAHNSEAA DSRGRGNSSE 420 SNTTPLRRLT KCESSVSVSL QRGFVPYKRC AAESESPRSE APREETDGEL TRLCL*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MASLQESAMV TDENTVAHRA AGGENAVNHH RKNHLNSDDM DLSGEDHVPK ARKPYTITKQ  60
REKWTEEEHK RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVT KESSGSSGGS  120
GSVAAAAAIQ IPPPRPKRKP AHPYPRKADE GAPAASKHGV TGLTQLERPP PVRMQSMCEQ  180
EDGSPTSVLG GGFSNNSNGS RSPLPSAAGS DEHGNNVYGS SVDGCLSSSI ATDELGFQVP  240
KTKVSERISN GDVKEASYTG SETSVLKLFG KSVVLKDSCQ KPNTSTGTPH NSGDLGTEAS  300
AETATQRSRS VPSVGAAEGG SWNPWPSTMQ QFVYFVPQPS DGFTTQSAMP WFSYNGALPG  360
ALFYQQAVAP NQHQRHHSTA ADHKVTQREG SWTGSNTAPG SAAAHNSEAA DSRGRGNSSE  420
SNTTPLRRLT KCESSVSVSL QRGFVPYKRC AAESESPRSE APREETDGEL TRLCL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G101700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572833.2	0.0	myb-like protein H
TrEMBL	I1ICP9	0.0	I1ICP9_BRADI; Uncharacterized protein
STRING	BRADI3G51960.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-35	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Brast04G101700.2.p