PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G095100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 462aa    MW: 48678 Da    PI: 6.1335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G095100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30223281259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Brast04G095100.1.p 223 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNTLVITYTSEHNHP 281
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-31216283IPR003657WRKY domain
PROSITE profilePS5081133.029217283IPR003657WRKY domain
SuperFamilySSF1182902.88E-26220283IPR003657WRKY domain
SMARTSM007741.6E-37222282IPR003657WRKY domain
PfamPF031061.5E-25224281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MCDYFLHRLE AGEQQPAGDL TDILRAGGAM PPVDAADLPS TVTEWRLPSP THLFAPTILQ  60
PSSASDGAGP MSAFEFGVDP FSGLQDPFST DYPSSSGSAA ADFFDALAHD ATDAKVGSYV  120
DPAAAAGGAG GPLDMRNNHH MMPIVPYAPV GRGAVKLGGP MAGGQGLCPF DGGVGSGLQM  180
SSSSPRSAGG GIKRRKNQAR KVVCIPAPEA AVAGRTTGEV VPSDLWAWRK YGQKPIKGSP  240
YPRGYYRCSS SKGCPARKQV ERSRTDPNTL VITYTSEHNH PWPTQRNVLA GSTRSHYAKN  300
SSNNNAATNS SKKNCTSRNQ QQKPIIAKAE PARDHQTAAT STPTTSTGGK NNAPPAAVKE  360
EAAGDDTSAA TLDDHLLQQM FSQSCYRPMI PDQIQAGGGG GHQDDFFADL TELDSDPVSL  420
IFSAEYMETC RQGGEPDKEK AVDNKDLLQL DPFVLDWAPA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-23196284280Disease resistance protein RRS1
5w3x_D1e-23196284280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G095100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689941e-130AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.
GenBankAK3722781e-130AK372278.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148O17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572849.10.0probable WRKY transcription factor 35 isoform X2
SwissprotQ9SA803e-65WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A0Q3JQQ30.0A0A0Q3JQQ3_BRADI; Uncharacterized protein
STRINGBRADI3G52420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-64WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]