PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G087900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 304aa    MW: 31670.5 Da    PI: 6.0485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G087900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10218259955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR++i +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Brast04G087900.1.p 218 AKNRREKISERLRTLQELVPNG-----TKVDMVTMLEKAISYVKFLQ 259
                         69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.612209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-13209267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14211270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-13211263No hitNo description
SMARTSM003533.0E-12215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7218259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALVREPMVL YDGGFDASEA SPFDALGCFG HDALLGGVDA AALFTGYAAH GEPAGAYVQG  60
GSHWAGVGAS VLAFDRAARG HGAHAMKAAA APEEEEECDA WIDAMDEDNG EAAPAPSIGF  120
DPATGCFSLT QRPGAGARRP FGLLFPSASS SSPPPDSAGP APRGAQKRPS ATIPRAQQDA  180
EPRASKKQCG ASRKTTGKAK SPATPATTSP KDPQSLAAKN RREKISERLR TLQELVPNGT  240
KVDMVTMLEK AISYVKFLQL QVKVLATDEF WPAQGGMAPE ISQVKEALDA ILSSQRGQFN  300
YSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G087900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096627e-87AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756070.21e-180transcription factor APG
TrEMBLA0A0Q3QGZ11e-178A0A0Q3QGZ1_BRADI; Uncharacterized protein
STRINGBRADI3G53060.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-51ROOT HAIR DEFECTIVE6