PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G068100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 417aa    MW: 43775.3 Da    PI: 5.901
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G068100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18336369134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Brast04G068100.1.p 336 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 369
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-14329392No hitNo description
PROSITE profilePS5011411.082330366IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-15330380IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14334367IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-14335392No hitNo description
PfamPF003201.2E-15336369IPR000679Zinc finger, GATA-type
PROSITE patternPS003440336361IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MASGRFMEEM MREHEQALLE ATLYDHIDDL LDFPKEEDCA ADVLLLDAPA PGSPLSARII  60
GAPPPVPPPV ELPPPPPPAA AAAPFFAAEA FGAKDCHIGP CEELDMDMAQ LEWLSGLFDD  120
ASIPHEPAFN CAAPIKASAM GATNAAAAVV IPDKLEDALF RSSSPTSVLE DNSFNNVGGG  180
AKNKNSINNG GGGGSSASSS SSSSASSCSE SFSGNGAGRA TWSAPVSPRP EPPVLIIPAR  240
ARSKRSRQSA FVRSNAPAME PTILVPTPMY SSTSAHSDPE SCNIAETNSQ PPAMKKKKKA  300
KKPAPPVTSD AEGDADADYE EGGGGSALPP GTVRRCTHCQ IEKTPQWRAG PLGPKTLCNA  360
CGVRYKSGRL FPEYRPAASP TFVPAIHSNS HKKVVEMRQK VAPKGDDLLQ YIRRRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G068100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536491e-112AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566851e-112AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235943.10.0GATA transcription factor 10
RefseqXP_010235944.10.0GATA transcription factor 10
RefseqXP_024316778.10.0GATA transcription factor 10
TrEMBLI1IDP30.0I1IDP3_BRADI; Uncharacterized protein
STRINGBRADI3G54720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-37GATA family protein