PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G063500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 445aa    MW: 49573.9 Da    PI: 5.8192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G063500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.82.1e-22251303150
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh...vkSHL 50 
                         k r++WtpeLHe Fv av +LGGsekAtPk++ ++mkv+gLt++h   ++SHL
  Brast04G063500.1.p 251 KSRMHWTPELHELFVGAVIKLGGSEKATPKAVQKIMKVEGLTIYHfsfIRSHL 303
                         68*******************************************66668998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-18249303IPR009057Homeodomain-like
SuperFamilySSF466893.4E-9249302IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-16251303IPR006447Myb domain, plants
PfamPF143792.2E-17356402IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MYTAILDTST MSQFCNGEVP WYLSSDITVL SALPEVTVPS FPQYNTSYIE RGLCRSSITS  60
FNTFLPASDG LQSTYMSASN FTSDLCINNG LPSEKLSSGS HIIAISGFDT SLPATHSSYK  120
GNPSSLRMLY PEVPEEICWV QEPVPGVFDY PASVNVSDQR NLVVSQEMQD VITLDHSTHL  180
AKQKEWFSSE SSGKILENSG WGESVLKAVD TRSTAPSNYT YFHMQNNVSS HFNIDELCSD  240
NFPSSDTAPT KSRMHWTPEL HELFVGAVIK LGGSEKATPK AVQKIMKVEG LTIYHFSFIR  300
SHLCTNLEGY LCLHNFKHIS KYPKGGIVSL VAVNLFVCAL EIWSLDSLFY TFYRDMDTSE  360
GLRTQIGLQK QLHEQLEIQR KLQLQVEEHS KYLEMAIAKQ GESLKQLGAL PGFENSRTHV  420
LDHIKACEDQ TVGTAFSGRE PLRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-18251303251Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G063500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235956.20.0protein PHOSPHATE STARVATION RESPONSE 2 isoform X1
TrEMBLA0A0Q3I6450.0A0A0Q3I645_BRADI; Uncharacterized protein
STRINGBRADI3G55120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.22e-32G2-like family protein