PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G060000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 650aa    MW: 70629 Da    PI: 8.6242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57e-09558607147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E ellv+av+qlG g+Wk +  +     + Rt  +ck++w ++
  Brast04G060000.1.p 558 RRPFSVAEVELLVEAVEQLGFGRWKDVKFHAFgsnNERTYVDCKDKWKNL 607
                         678999*********************988767**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.1E-8381461IPR029071Ubiquitin-related domain
PROSITE profilePS500538.894386456IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.907.9E-4389457No hitNo description
PROSITE profilePS5129417.482553612IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-11554609IPR009057Homeodomain-like
SuperFamilySSF466894.93E-14555610IPR009057Homeodomain-like
SMARTSM007172.7E-8557610IPR001005SANT/Myb domain
PfamPF002491.1E-6558607IPR001005SANT/Myb domain
CDDcd116601.79E-15559609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVFRKMPGRG SRGRGRGRGR GSGQVRAMPC ATTLAPVKRS ARLKKKQMYA LDLLATVAET  60
LSSDQEGSSS GTDTDGAVAS YNSNGTSVKL EQFDEVPPFN STAFGENCCG EYTVSCAGTC  120
ASLRQTNICK MDSLLTQNVA DIVSGSLTEK SDVFVKGSPV SCTKPSRLDC GLGTIPEYGT  180
IGVCPPCLTR SVDVKQEDGA RPAVIKSQVD GSAATLHSSV DTMDLDIKPP PVISSESTSG  240
VHLDVHEKGH NSSPFCFSKV QHATGRDENP PRCVHPNTSG SKGGYLPHYL GDCRTRRLFA  300
TRIRKAARNK ICGKMSNKGS KLNFRGKKIS TARRRVQMHR TMLKTKKVAE FYSAQPSDEE  360
TLTETSGTSF SMGGQDPPCA SEGCHVKFII KSFNIPELLI EVPENATVGS LKRIVRDAVT  420
KTIEGSLRVS VLLQGQIIQD DNKTLHQAGI CHGAKLDSMG FTLECEAERG SHPSAIPPEE  480
MEPVGVSDVQ PLSTVKWEEP SPSCSLSNPG DYPFEGTVQD TSESSQAIGT APTPNITELA  540
IVPFSKSKQR DFGQRRKRRP FSVAEVELLV EAVEQLGFGR WKDVKFHAFG SNNERTYVDC  600
KDKWKNLVHT ASIPLQLRRG QAIPPQELLD RVLAAQTYWS MQQPKHERC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A2e-435346417113Telomere binding protein-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11120RGRGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G060000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733772e-98AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757203.10.0telomere-binding protein 1 isoform X1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A0Q3FQE50.0A0A0Q3FQE5_BRADI; Uncharacterized protein
STRINGBRADI3G55430.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-55TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]