PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G032700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 330aa    MW: 35186.9 Da    PI: 10.5567
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G032700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.31.2e-14130198370
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 
                         +qrlw + De++lL+G   f+a+tg  p   d+ ++++ +++s+s +  +  +  K++rLK Kf +   
  Brast04G032700.1.p 130 VQRLWGDADEVALLKGAAAFRARTGRVPRLpDMGQLFDSIRGSLSPHLDQAKVYYKLKRLKSKFLHAAP 198
                         79************************77766*********************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.5E-14131217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPSKRPSPSA MDAMDAAASS PSSSPGSQKR PSRPKLRLDH GRPEPNPRSR GSHSGSTPSR  60
KSGRKRKRRP RALPEPDAVT APAERRPRAG ALPESGAGTP SAERRSRPPP EAAALTVLAA  120
ATGAGYRGAV QRLWGDADEV ALLKGAAAFR ARTGRVPRLP DMGQLFDSIR GSLSPHLDQA  180
KVYYKLKRLK SKFLHAAPAG AAGPHDLLVR DLCYDVWAAH LGLSAAEDDA LDDAVDAEEA  240
SERRTVPDAA AMLPVVTEVL DAYWKTSGPA LSGVSLEKGL SLLGTEAARS IEAKWRQQLD  300
EEVHSQMRRH DLAKEVYGLL LGAIKRLGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368RKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G032700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236068.11e-173STOREKEEPER protein
TrEMBLA0A0Q3INF31e-171A0A0Q3INF3_BRADI; Uncharacterized protein
STRINGBRADI3G57800.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.19e-10DNA-binding storekeeper protein-related transcriptional regulator