PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G030500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 348aa MW: 37519.9 Da PI: 10.4177

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G030500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.1e-14	267	314	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.lee 51 +r+rr++kNRe+A rsRqRK+ ++ eLe++v++L++ N++L+k+ +e+ Brast04G030500.1.p 267 RRQRRMIKNRESAARSRQRKQSYMMELETEVAKLKERNEELQKKqVEM 314 79*************************************997541444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-11	263	328	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	265	310	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-15	267	320	No hit	No description
Pfam	PF00170	1.9E-12	267	311	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.92E-22	267	319	No hit	No description
SuperFamily	SSF57959	7.88E-11	267	313	No hit	No description
PROSITE pattern	PS00036	0	270	285	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDFPGGSGRQ QPLPPMTPLP LGRQGSSVYS LTFDEFQSAL GGPGKDFGSM NMDELLRNIW 60 TAEESQALGA VVGNASSSAA ADQGAGAAPI QRQGSLTLPR TMSQKTVDEV WRDMAYFGGP 120 SAAPAAAELP PAQRQQTLGE VTLEEFLVRA GVVREDMAGP PPVSPAPATA AQQPPPPQPQ 180 MLFPQSNMFA PMVNPLSLGN GMMAGAFGQG GGGATTAVSP ARPVMSNGFG KMEGLNLSSL 240 SPPPMPYVFN GGLRGRKAPA MEKVVERRQR RMIKNRESAA RSRQRKQSYM MELETEVAKL 300 KERNEELQKK QVEMLERQKN EVFENIRRQV GPKSKRICLR RTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDFPGGSGRQ QPLPPMTPLP LGRQGSSVYS LTFDEFQSAL GGPGKDFGSM NMDELLRNIW  60
TAEESQALGA VVGNASSSAA ADQGAGAAPI QRQGSLTLPR TMSQKTVDEV WRDMAYFGGP  120
SAAPAAAELP PAQRQQTLGE VTLEEFLVRA GVVREDMAGP PPVSPAPATA AQQPPPPQPQ  180
MLFPQSNMFA PMVNPLSLGN GMMAGAFGQG GGGATTAVSP ARPVMSNGFG KMEGLNLSSL  240
SPPPMPYVFN GGLRGRKAPA MEKVVERRQR RMIKNRESAA RSRQRKQSYM MELETEVAKL  300
KERNEELQKK QVEMLERQKN EVFENIRRQV GPKSKRICLR RTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269\|PubMed:18931143, ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:27325665, ECO:0000269\|PubMed:27424498}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G030500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:18931143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010236076.1	1e-174	bZIP transcription factor 23 isoform X1
Swissprot	Q6Z312	1e-153	BZP23_ORYSJ; bZIP transcription factor 23
TrEMBL	I1IEV0	1e-173	I1IEV0_BRADI; Uncharacterized protein
STRING	BRADI3G57960.1	1e-174	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	3e-42	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Brast04G030500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang Y,Tang N,Du H,Ye H,Xiong L Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol., 2008. 148(4): p. 1938-52 [PMID:18931143] Shen J,Xie K,Xiong L Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics, 2010. 284(6): p. 477-88 [PMID:20941508] Luo C,Guo C,Wang W,Wang L,Chen L Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep., 2014. 33(2): p. 323-36 [PMID:24247850] Sakuraba Y, et al. Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle. Plant Cell Physiol., 2015. 56(12): p. 2325-39 [PMID:26443376] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS ONE, 2016. 11(3): p. e0150763 [PMID:26959651] Zong W, et al. Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes. Plant Physiol., 2016. 171(4): p. 2810-25 [PMID:27325665] Dey A,Samanta MK,Gayen S,Maiti MK The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression. BMC Plant Biol., 2016. 16(1): p. 158 [PMID:27411911] Gui J, et al. OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice. Dev. Cell, 2016. 38(2): p. 201-13 [PMID:27424498]