PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G027500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25645.9 Da    PI: 6.1571
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G027500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.3e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krie++  rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Brast04G027500.1.p  9 KRIESSAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                        79*********************************************9986 PP
2K-box59.51.4e-20901711899
               K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         + ++a+L++++ +    +R++ Ge+Le Ls++eLqqLe++Le++l ++ ++K++ +leqi+elq+k  +l een++Lr+++ 
  Brast04G027500.1.p  90 HSKYANLNDQLAEASLRLRQMRGEELEGLSVEELQQLEKKLETGLHRVLQTKDQQFLEQINELQRKSSQLAEENMQLRNQVS 171
                         345667777777777899************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.707161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.90E-39275No hitNo description
SuperFamilySSF554552.49E-30374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003199.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.07686176IPR002487Transcription factor, K-box
PfamPF014865.1E-1892170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARERREIKR IESSAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
SMNEIIDKYS THSKNLGKAD KPSLDLNLEH SKYANLNDQL AEASLRLRQM RGEELEGLSV  120
EELQQLEKKL ETGLHRVLQT KDQQFLEQIN ELQRKSSQLA EENMQLRNQV SQIPTTGKLV  180
VADTENVIAE DGQSSDSVMT ALHSGSSQDN DDGSDVSLKL ALPCVPWKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20173173MEF2C
5f28_B2e-20173173MEF2C
5f28_C2e-20173173MEF2C
5f28_D2e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G027500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693250.0KF469325.1 Brachypodium distachyon MADS-box transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288317.11e-165MADS-box transcription factor 22-like
SwissprotQ9XJ661e-138MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLI1IEY21e-164I1IEY2_BRADI; MADS-box transcription factor 30
STRINGBRADI3G58220.11e-165(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]