PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G298900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 350aa    MW: 37287.7 Da    PI: 7.0655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G298900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.62e-33241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+ ++++isw + g++fvv+ + efa+++Lp+ Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+
  Brast03G298900.1.p  24 FLAKTYQLVDDPVVDDVISWGDGGDTFVVWRPAEFARDLLPSCFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFRRGEKR 105
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Brast03G298900.1.p 106 LLCEIHRRKV 115
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3613108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5520113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAMAAASSSA ETAAAQRAAG PTPFLAKTYQ LVDDPVVDDV ISWGDGGDTF VVWRPAEFAR  60
DLLPSCFKHN NFSSFVRQLN TYGFRKVVPD RWEFANDFFR RGEKRLLCEI HRRKVTPPTS  120
AVTVSAIPMA LPMATTTGQG GSAAEEQVLS SSSSSEREPP PSCSGSASGV GGDLGDENQR  180
LRRENARLAR ELGHMKKLCN NIFSLMSKYA SAQQTDAPAN ASAAAAGGNC SGQSPLRPPP  240
PPPTPSLELR LPSSSSPGPP EAARAEDAEA LDEEEKKTSA VLFGVCIGRK RMRDDQGLGG  300
AAAEVKPEPM DGRPTEPQGW PVYRPRPVYQ HPLQLHACCS DGHAGSNSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-221811620131Heat shock factor protein 1
5d5v_B8e-221811620131Heat shock factor protein 1
5d5v_D8e-221811620131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G298900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235376.11e-155heat stress transcription factor B-2b
SwissprotQ6Z9C81e-110HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLI1I9811e-153I1I981_BRADI; Uncharacterized protein
STRINGBRADI3G42130.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-55heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]