PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G279300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 448aa    MW: 49126.9 Da    PI: 8.0507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G279300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.5e-13752146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+WT+eEde l + v+++G + W++I ++  + Rt+k+c++rw +
  Brast03G279300.1.p  7 KGPWTAEEDEVLRRHVREHGAREWSSIRSRGLLPRTGKSCRLRWVN 52
                        79*************************8775577**********87 PP
2Myb_DNA-binding42.61.4e-1388128345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  Brast03G279300.1.p  88 KFSAEEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 128
                         79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.019258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-19360IPR009057Homeodomain-like
SuperFamilySSF466891.09E-25556IPR009057Homeodomain-like
SMARTSM007176.6E-12656IPR001005SANT/Myb domain
CDDcd001675.18E-12954No hitNo description
PfamPF139211.9E-111060No hitNo description
PROSITE profilePS5129419.46981135IPR017930Myb domain
SMARTSM007172.0E-1085133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-1788130IPR009057Homeodomain-like
CDDcd001671.81E-1088127No hitNo description
PfamPF002498.0E-1288128IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2588127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSAAVKKGPW TAEEDEVLRR HVREHGAREW SSIRSRGLLP RTGKSCRLRW VNKLRPNLKT  60
YARNAMQCKS SRAASALLPL KDDQWGCKFS AEEERVVIEL QAQFGNKWAR IATYLPGRTD  120
NDVKNFWSTR QKRLARILRA PLLRPRTRRP AAAKQQSSRA ASSSSSSTAA APSHSHELLP  180
TGQASEPLYQ VQDHRPCFDM IPFHEPPMHD HHIIGQSWSQ EPPPLTWSPH RADAGKQNVA  240
GAPSSTSATF HELLPPGAPE PLCQVQDRPY FHMIPFQEPP PLLTTRHYIV GQSSQDPLPV  300
MANPRCADAP LLFPGLLGPE PILPSPVAGF ATPTGICSSS SYGAAAPALS FHHPLSFLCA  360
TDPTPMVDPA ATLAGNGGVP YLEPKPEQPS PPPLGFFGPE EESIDEYGLL GGLSRRDMIF  420
DDLAPEMLDF FELPPSLPPL PPPSTRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-22113321126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G279300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630004e-40AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316134e-40AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149604e-40AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-40CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317615.10.0transcription factor MYB80-like
TrEMBLA0A2K2D2D40.0A0A2K2D2D4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-53MYB family protein