PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G275500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 382aa    MW: 41967.9 Da    PI: 6.7389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G275500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50361771128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee............vikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknrat 78 
                         lppGfrFhPtdeelv++yL++k+ +++++ ++            +i evd++++ePw+Lp ++  ++e+ewyfFs rd+ky+tg r+nrat
  Brast03G275500.1.p  36 LPPGFRFHPTDEELVTFYLAPKAFNNNNSSSNnnddsgssaavdFIVEVDLNRCEPWELPeSARMGGEREWYFFSLRDRKYPTGLRTNRAT 126
                         79********************99988444334556777777658***************433345788********************** PP

                 NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +gyWkatgkdkevl++ +g+l+g+kktLvfy+grap+g+k++Wv+heyrl
  Brast03G275500.1.p 127 GAGYWKATGKDKEVLCAaTGALIGMKKTLVFYEGRAPRGHKSKWVLHEYRL 177
                         ***************9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6225200IPR003441NAC domain
PROSITE profilePS5100558.14436200IPR003441NAC domain
PfamPF023659.1E-2737177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MHQHPSSAAA MGAEALWDLL SEDMAAAAAA AAEHGLPPGF RFHPTDEELV TFYLAPKAFN  60
NNNSSSNNND DSGSSAAVDF IVEVDLNRCE PWELPESARM GGEREWYFFS LRDRKYPTGL  120
RTNRATGAGY WKATGKDKEV LCAATGALIG MKKTLVFYEG RAPRGHKSKW VLHEYRLDGD  180
FASDRRSCKE EWVVCRIFHK AVDQYSSKMM EMRMMSPYHH CYHPMSHRHH PSFVFQEAPP  240
VPFPSPSDQL PVVPFLHHHH HDLIPNQQQP SPLITQNHHQ LLQAADKNSS SNNGGFPVPA  300
AACIQDHQPN NNTAPYFPFP SFASASGVTV AVNGAGKAGP LPGVNGAGPQ ELPPTWPLDN  360
FLQHGTYLYE AGPPAGAPRD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47242003168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G275500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572371.30.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8512e-79NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0Q3HZE50.0A0A0Q3HZE5_BRADI; Uncharacterized protein
STRINGMLOC_13932.11e-143(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-79NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]