PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G273700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 375aa    MW: 40131.9 Da    PI: 7.5382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G273700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.6e-13309354655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Brast03G273700.1.p 309 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 354
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16306362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.39E-14307358No hitNo description
Gene3DG3DSA:4.10.280.104.2E-15308364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYGSPVSKDL NQPPPPMNSS GLLRYRSAPS TLLGEVCEEF LPRAASPDSG ADNVFSRFLA  60
DHQIRDSKPP APPPPVPAGG HFPDEAAMAS QQQQQMMFHS QQQQQQQQQM GGVEGLYRTV  120
SSGGMDSAAA AATAGASSLI RQSSSPAGFL NHLNMDNGYE SMLRAGMGMG FRNGTTAATA  180
VDSSGSGGSR LKGQLSFSSR QGSLMSQISE MGSEDLGGSS PEAAGGGRGY MPGYPMSSGW  240
EESSLMSENM SGMKRPRDSS EPAQNGLAHQ FSLPKTSSEM AAIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTRIS ERIRKLQELV PNMDKQTNTA DMLDLAVDYI KELQEQVKVI  360
NESRANCTCS ASKH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G273700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574744.10.0transcription factor bHLH130
TrEMBLA0A0Q3QB410.0A0A0Q3QB41_BRADI; Uncharacterized protein
STRINGBRADI3G39927.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-51bHLH family protein