PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G258700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 258aa MW: 27877 Da PI: 4.4039 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le Fek++++ e++++LA+ lgL+ rqV vWFqNrRa++k Brast03G258700.1.p 48 KKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 101 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.2 | 8.2e-42 | 47 | 139 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls eqv++LE sFe+++kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal++++++L++++++L +e+ Brast03G258700.1.p 47 EKKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDHAALRQSFDALRADHDALRRDKDALLAEV 137 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 k+ Brast03G258700.1.p 138 KA 139 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-19 | 39 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-19 | 46 | 107 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.1E-17 | 48 | 101 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-19 | 48 | 104 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-20 | 50 | 109 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.4E-6 | 74 | 83 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-6 | 83 | 99 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.5E-15 | 103 | 144 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRRLVASRAG GPPVFPMAPT DDGFAGVGME EDDADEDMAV CGGGAGEKKR RLSVEQVRAL 60 EGSFEKDNKL EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDHA ALRQSFDALR 120 ADHDALRRDK DALLAEVKAL KAKLLGDDDE DGAAVASFSS VKEETAAAQG SSESDSSEVL 180 NDAAVPPPPD DKATPTPAKA VVPEMGLYAV HGQQLLLKVE DDEAAFLGDD DAACGGFFVD 240 EQPPSLPWWT EPTDPWA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 78 | ERKARLA |
2 | 95 | 103 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G258700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068244 | 1e-118 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. | |||
GenBank | AK106818 | 1e-118 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. | |||
GenBank | CT829446 | 1e-118 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572308.1 | 1e-129 | homeobox-leucine zipper protein HOX20 | ||||
Swissprot | A2YWC0 | 9e-96 | HOX20_ORYSI; Homeobox-leucine zipper protein HOX20 | ||||
Swissprot | Q6Z248 | 9e-96 | HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | I1I801 | 1e-128 | I1I801_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38600.1 | 1e-128 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 7e-43 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G258700.1.p |
Publications ? help Back to Top | |||
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