PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G241100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 125aa MW: 13033.6 Da PI: 7.9174 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.2 | 4e-28 | 24 | 77 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY eC++Nh a++Gg+avDGC+Efm++ geegt+ al+CaACgCHR+FH r Brast03G241100.1.p 24 GVRYGECRRNHVARTGGYAVDGCREFMAE-GEEGTSGALRCAACGCHRSFHHRVL 77 68**************************8.999******************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-16 | 23 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-27 | 25 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.7E-21 | 26 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.079 | 27 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MKRFVILRRC HPPPPPAATA FGGGVRYGEC RRNHVARTGG YAVDGCREFM AEGEEGTSGA 60 LRCAACGCHR SFHHRVLVPA RCCCRHLHAD ADADADADAG AGASGLSWDV CSTESTASST 120 AATR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G241100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236710.1 | 8e-53 | mini zinc finger protein 4 | ||||
Swissprot | Q0J5F8 | 1e-31 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A2K2D1P8 | 2e-51 | A0A2K2D1P8_BRADI; Uncharacterized protein | ||||
STRING | MLOC_45078.4 | 2e-31 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 5e-23 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G241100.1.p |
Publications ? help Back to Top | |||
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