PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G208300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 707aa    MW: 76226.2 Da    PI: 6.6337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G208300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12529574454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Brast03G208300.1.p 529 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 574
                         799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-5150232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-18528596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-14528575No hitNo description
Gene3DG3DSA:4.10.280.102.5E-18529596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10529574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15531580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD LPAFPWGAAA TPPPPAAVMP QQPAFNQDTL QQRLQAIIEG  60
SRETWTYAIF WQSSTDAGAG ASLLGWGDGY YKGCDDADKR ARQQPTPASA AEQEHRKRVL  120
RELNSLIAGG GAAAPDEAVE EEVTDTEWFF LVSMTQSFPN GMGLPGQALY AGQPTWIASG  180
LASAPCERAR QAFTFGLRTM VCIPVGTGVL ELGATEVIFQ TADSLGRIRS LFNLNGGGGG  240
GAGSSWPPVA QQQQQGGDQA ETDPSVLWLT DAPVGDMKES PSVEISVSKP PPPPQIHHFE  300
NGSTSTLTEN AGPSLHAHQQ PATLAPAAPP RQNQHPHQLQ LQHQHQHQQS QQPQQQQGPF  360
RRELNFSDFA TNASVTVTPP FFKPESGEIL NFGADSTSRR NPSPAPPAAA ASLTTAPGSL  420
FSQHTATVTA PTNEAKNNPK RSMEATSRAS NTNHHPSAAA NEGMLSFSSA PTTRPSTGTG  480
APAKSESDHS DLEASVREVE SSRVVPPPEE KRPRKRGRKP ANGREEPLNH VEAERQRREK  540
LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRGKMTA LESDKDTLHS QIEALKKERD  600
ARPVAPLSGV HDSGPRCHAV EIEAKILGLE AMIRVQCHKR NHPAAKLMTA LRELDLDVYH  660
ASVSVVKDIM IQQVAVKMPN RVYSQDQLNA ALYSRLAEPG AAMPIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-64422351195Transcription factor MYC3
4rqw_B2e-64422351195Transcription factor MYC3
4rs9_A2e-64422351195Transcription factor MYC3
4yz6_A2e-64422351195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510518KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G208300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578160.0AK357816.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062G16.
GenBankAK3598130.0AK359813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1103K10.
GenBankAK3604650.0AK360465.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574381.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLI1I6F30.0I1I6F3_BRADI; Uncharacterized protein
STRINGBRADI3G34200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-147bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]