PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G185500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 202aa MW: 22914 Da PI: 10.1812 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.3 | 6.1e-32 | 27 | 80 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH+rFv+a+++LGG+ +AtPk++l+lm+v gLt++hvkSHLQ+YR Brast03G185500.1.p 27 PRLRWTPELHRRFVHAIHSLGGHRRATPKRVLQLMGVGGLTISHVKSHLQMYRN 80 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.746 | 23 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 23 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-16 | 25 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 27 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-10 | 28 | 79 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTMESRTMAA GRERVDRVRQ YNRSKVPRLR WTPELHRRFV HAIHSLGGHR RATPKRVLQL 60 MGVGGLTISH VKSHLQMYRN MRGNDLDMMQ GIQQMDQEHT FSGGMEVWTD VQQVHHHHEY 120 CDGPYCSRHS PKHTVLLHHT QLKRPSEMES TQDAEAASPQ KSLLQGIRER DAAAGGRLLL 180 RQYSLAAAGQ QAAAAAAAGY CY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-20 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-20 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-20 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-20 | 28 | 82 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G185500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572016.3 | 1e-124 | uncharacterized protein LOC100832345 | ||||
TrEMBL | A0A2K2D0I1 | 1e-122 | A0A2K2D0I1_BRADI; Uncharacterized protein | ||||
STRING | Traes_1BL_E2629CBC1.1 | 2e-91 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 4e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G185500.1.p |