PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G100800.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 304aa    MW: 33828.6 Da    PI: 6.7985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G100800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.8e-3347101155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         ++rlrWt+eLH+rFveav++LGG+++AtPk +l++m+++gLt++hvkSHLQkYRl
  Brast03G100800.4.p  47 RQRLRWTNELHDRFVEAVTHLGGPDRATPKGVLKIMGLPGLTIYHVKSHLQKYRL 101
                         58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.53444104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-3046102IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1746101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2548102IPR006447Myb domain, plants
PfamPF002498.4E-949100IPR001005SANT/Myb domain
PfamPF143795.2E-24134180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYQPNQISSI DQNHGSPAAH DQMEPGGTSM SMVPGNRWND NSNMASRQRL RWTNELHDRF  60
VEAVTHLGGP DRATPKGVLK IMGLPGLTIY HVKSHLQKYR LAKYIPDPSA SDDNKAEEKD  120
PGDLLAALEG SSGMPISEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQKIIEEQQR  180
IAAAGPSRAT YSDQMPDSER TNPSTPGLTS ESQVHNATKD NRNQIELTKS SLNDDPLACR  240
QPLTPDCSRP SSPTLSPKHE RPVKRHRGSD TSFEDDHFVL PRTIFESSTA SQFQDCSSPY  300
SGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2347104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2347104259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G100800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573787.10.0myb family transcription factor PHL7
RefseqXP_024317461.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-78PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLI1I3940.0I1I394_BRADI; Uncharacterized protein
STRINGBRADI3G22290.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-65G2-like family protein