PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G100800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33828.6 Da PI: 6.7985 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.9 | 9.8e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav++LGG+++AtPk +l++m+++gLt++hvkSHLQkYRl Brast03G100800.2.p 47 RQRLRWTNELHDRFVEAVTHLGGPDRATPKGVLKIMGLPGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.534 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 46 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-25 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-9 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.2E-24 | 134 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MYQPNQISSI DQNHGSPAAH DQMEPGGTSM SMVPGNRWND NSNMASRQRL RWTNELHDRF 60 VEAVTHLGGP DRATPKGVLK IMGLPGLTIY HVKSHLQKYR LAKYIPDPSA SDDNKAEEKD 120 PGDLLAALEG SSGMPISEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQKIIEEQQR 180 IAAAGPSRAT YSDQMPDSER TNPSTPGLTS ESQVHNATKD NRNQIELTKS SLNDDPLACR 240 QPLTPDCSRP SSPTLSPKHE RPVKRHRGSD TSFEDDHFVL PRTIFESSTA SQFQDCSSPY 300 SGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G100800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573787.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_024317461.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-78 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | I1I394 | 0.0 | I1I394_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G22290.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G100800.2.p |