PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G093900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 308aa    MW: 33606.7 Da    PI: 4.7548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G093900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-10129175455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          h + ErrRR+++ + f++L +++P  a      K +K++ L  +++Y+++L+
  Brast03G093900.1.p 129 EHVASERRRREKMHHQFATLASIIPDiA------KTDKVSLLGSTIQYVHKLE 175
                         69999*********************88......***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.497125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-15129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.93E-10130179No hitNo description
SuperFamilySSF474597.85E-14130190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDSSSNQWLT ELENVELAEN LDLVDEISMQ QLAESLAEEL IPRDDQHHHK SLMPSLAAGF  60
SFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSLEKRLSG  120
RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKTDK VSLLGSTIQY VHKLEEKLKA  180
LKEHQSTAST AESAPMFDIR CCIGNTGDGE EDGSENDESS SVRPKIEVNV RGTTVLLRIT  240
CREKKGVLIM VLMELEKHGL SVMNTSVVPF GDSDLSSLNI IITAEIENGS CPTGELVKNL  300
DLALRNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRE
2134139RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G093900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318240.10.0transcription factor bHLH18 isoform X1
RefseqXP_024318241.10.0transcription factor bHLH18 isoform X1
RefseqXP_024318242.10.0transcription factor bHLH18 isoform X1
TrEMBLI1I3310.0I1I331_BRADI; Uncharacterized protein
STRINGBRADI3G21460.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-21bHLH family protein