PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G064100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 309aa    MW: 33649.6 Da    PI: 6.657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G064100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.6e-13192282196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         f  ++++s+v k  +l +p +f+  + ++k+++   tl   +g+sW + +  r+  +   l + Wk+F+ +n+L++ D ++F+l++   e+
  Brast03G064100.2.p 192 FTMIMSRSHVQKPFQLGIPARFL--YRLPKACK-AATLI-CRGKSWPMSY--RGDLKVKKLDAAWKDFAIDNRLQVDDACIFELVNGaGEE 276
                         6678999***************9..77777773.55555.59********..88888899***********************99776999 PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                         elv++v
  Brast03G064100.2.p 277 ELVFQV 282
                         999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-16186286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-15188283IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-16190286No hitNo description
PfamPF023627.4E-11192282IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842192288IPR003340B3 DNA binding domain
SMARTSM010190.0034192288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSAASTETLP GGGDAAIDAD EGPLSRELRQ LPDQVLQEKL RRMEGMAGFA PRLPDGGRMY  60
DVKLQAVRRE LGRRRQQQAA AASCPAPPPP SPSPVPPTPL HAPHGEPPTD VGRCEQVVQS  120
RCAESPEIQV PPSLPVHSAQ TPACPSKQLP DVHVIKTKLE PCEDSPAQAP YPARDATEDW  180
ETTPLSGNRP FFTMIMSRSH VQKPFQLGIP ARFLYRLPKA CKAATLICRG KSWPMSYRGD  240
LKVKKLDAAW KDFAIDNRLQ VDDACIFELV NGAGEEELVF QVQILRCGLP KEVLSKGATA  300
DDPMIILD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G064100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234507.11e-159B3 domain-containing protein Os06g0112300 isoform X2
TrEMBLA0A0Q3JBP91e-158A0A0Q3JBP9_BRADI; Uncharacterized protein
STRINGEMT131662e-99(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-07B3 family protein