PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G036600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 371aa    MW: 39556.3 Da    PI: 9.5132
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-1295139347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE++ ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Brast03G036600.1.p  95 SWSEEEHKNFLLGLNKLGKGDWRGISRNYVVSRTPTQVASHAQKY 139
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.8E-41837IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6971934IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.26887144IPR017930Myb domain
SuperFamilySSF466891.48E-1589145IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1791143IPR006447Myb domain, plants
SMARTSM007172.2E-992142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-994138IPR009057Homeodomain-like
CDDcd001672.38E-895140No hitNo description
PfamPF002493.3E-1095139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTRDGVPPPA PAPAGDGPRR CSQCGHHGHN ARTCTARGPV KLFGVRIGDK PPIRKSASMG  60
NLAQLAAEGS GGGARAGGYG SEGDDDKPHR KRGESWSEEE HKNFLLGLNK LGKGDWRGIS  120
RNYVVSRTPT QVASHAQKYF IRQSNVHRRK RRSSLFDMVI DDSGDLPLSR SSSQEMPLSR  180
SSSQEVEEYI EDLQPVSASV PVTASPAPVL TNASSPPVPA MAHQPEENVL AGSSSNTREA  240
GTMMPQVMHP YGYPVMFPPP HYAPAFYPVP YYGYAPMFYG PPVPVQASSQ ATVQASHELV  300
KPVAAHSGPQ INVEDLYGMS ELSLKGNSNT NGVAPNLQLP PRPNGTTDRR SAFHAKAPAN  360
GSSNGLIPAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G036600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519520.0JF951952.1 Triticum carthlicum clone TaMYB69 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573373.10.0transcription factor MYBS3
TrEMBLI1I0V80.0I1I0V8_BRADI; Uncharacterized protein
STRINGBRADI3G14830.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-51MYB_related family protein