PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G022400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 841aa MW: 95575.7 Da PI: 6.8755

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G022400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.6	2.8e-25	98	186	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v + dgkw+ tkl++eHnHe+ Brast03G022400.1.p 98 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVeGKKTRKRPASIRKGCNAMLEVLHRGDGKWVATKLVKEHNHEV 186 9************************************9998776356667777899***************************96 PP
2	FAR1	60.5	5.2e-19	220	308	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA +vGF+ r+++s+ks ++++ ++ ++vCs++ +++ +++++e++++ r gC+a +++ ++++++w+v+kl leH+Hel+p Brast03G022400.1.p 220 FYYSYAIRVGFEARVRQSRKS-QDESLKMLKLVCSRHRHHSGRETNAEDANKALDPLRDGCDALFEIIRKQQDVWMVSKLILEHTHELNP 308 9*****************9.6777****************9999999999*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-23	98	186	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.3E-16	220	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-18	409	499	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	675	723	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-7	675	720	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	698	725	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MEVEEQAMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PLHNVQIVDH HAQLLPAATT 60 AVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC 120 SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIRKGCN AMLEVLHRGD GKWVATKLVK 180 EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS 240 QDESLKMLKL VCSRHRHHSG RETNAEDANK ALDPLRDGCD ALFEIIRKQQ DVWMVSKLIL 300 EHTHELNPAP PSRVCCVRSQ GEILVIAKNF ADTRNLLLNG QDSQPSREIQ YNDLGPDDAQ 360 SLLEYLKKVQ VEDPAFFYAV QLDKNEQTVN IFWADANARM AYYHFGDAVR FETAYRNSKE 420 HIPIVIFSGV NHHVQPVVFG CALLVDESEN SFAWLFEKWL EAMHVRPPVS FVTELNQQMA 480 AAAAKVLPDT CHIFCEKHIF GTVKEELHNI YPELDHFIAD LRKCIDGCRK EESFESCWDS 540 VLIKHGFRNN EVLQSLYDIR QQWAPAYTKK SFHATNLLPQ SEIFEKIIDK YFSSKTQLQV 600 SVQQLGQAIC SSYEKEARAD YLTMVQVPAL RTASPVEKQA SLVFTRTVFD IFQEQFAESF 660 GYHAERFEDG MVHKYRVTVD DGDEESHTVS FSPDQSTVCC SCCLFESCGI LCRHALRVFI 720 IEGVRFLPKA YVLKRWTKHA KSTVTLDNYT DLRGYCEDPS TSRYNDLCYD AIRCAKEGSA 780 SSELYKIAKD VLHKALDEVM SLRNTRQQNL QNCTTSLKSP VKKFGKAKDT SGKSLKRKNI 840 *

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MEVEEQAMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PLHNVQIVDH HAQLLPAATT  60
AVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC  120
SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIRKGCN AMLEVLHRGD GKWVATKLVK  180
EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS  240
QDESLKMLKL VCSRHRHHSG RETNAEDANK ALDPLRDGCD ALFEIIRKQQ DVWMVSKLIL  300
EHTHELNPAP PSRVCCVRSQ GEILVIAKNF ADTRNLLLNG QDSQPSREIQ YNDLGPDDAQ  360
SLLEYLKKVQ VEDPAFFYAV QLDKNEQTVN IFWADANARM AYYHFGDAVR FETAYRNSKE  420
HIPIVIFSGV NHHVQPVVFG CALLVDESEN SFAWLFEKWL EAMHVRPPVS FVTELNQQMA  480
AAAAKVLPDT CHIFCEKHIF GTVKEELHNI YPELDHFIAD LRKCIDGCRK EESFESCWDS  540
VLIKHGFRNN EVLQSLYDIR QQWAPAYTKK SFHATNLLPQ SEIFEKIIDK YFSSKTQLQV  600
SVQQLGQAIC SSYEKEARAD YLTMVQVPAL RTASPVEKQA SLVFTRTVFD IFQEQFAESF  660
GYHAERFEDG MVHKYRVTVD DGDEESHTVS FSPDQSTVCC SCCLFESCGI LCRHALRVFI  720
IEGVRFLPKA YVLKRWTKHA KSTVTLDNYT DLRGYCEDPS TSRYNDLCYD AIRCAKEGSA  780
SSELYKIAKD VLHKALDEVM SLRNTRQQNL QNCTTSLKSP VKKFGKAKDT SGKSLKRKNI  840
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G022400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252774	0.0	AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756691.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X7
TrEMBL	A0A0Q3FAJ8	0.0	A0A0Q3FAJ8_BRADI; Uncharacterized protein
STRING	Traes_5BL_CCDB985ED.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-122	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Brast03G022400.1.p