PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G021900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GeBP | ||||||||
Protein Properties | Length: 421aa MW: 46595.4 Da PI: 8.8625 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.5 | 1e-09 | 226 | 313 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +++r+w ++De+++L + +f ++ p ++f+e v ++++ + + + + +K+++LK+++ +v+ +++h++ +l Brast03G021900.1.p 226 KVRRVWYNKDELLILNEINNFLLQHQRLPEPKENDFFESVLEQLEDDTCDlRSVKDKMKSLKRRYDAHVTA---------TTDHERLLDNL 307 679*****************************************99876537889************9999.........78888889999 PP DUF573 92 skkiWg 97 s+kiWg Brast03G021900.1.p 308 SEKIWG 313 999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.6E-10 | 228 | 313 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MAGCGGEGES SLLRRRRRAV SARARVLSRQ PQPPSPSLPA GPRHPARRHR RRPISPMQQK 60 RSRKTASGSK GSVVSGSSLV AVEPQIANKP PPPPPKQEAE GSRSDKDRGP TDGAVAGAEE 120 EEEDGDISSS DLEPTPSANS PVVSREDDDE EESPDDGNEV DMQPQGMKRS RSNDAPGANP 180 QPSKKKRDTT SHQPEVPALR QEAEDEEPGS AHQPGERGLC FGKVEKVRRV WYNKDELLIL 240 NEINNFLLQH QRLPEPKEND FFESVLEQLE DDTCDLRSVK DKMKSLKRRY DAHVTATTDH 300 ERLLDNLSEK IWGPRGSNIA GSKNGDKSAL VEAEKKFGEM YPLLTQEVML IADEEPSAKS 360 LCIGLDAEKA LSIEKRLERI KETEKKIQMR MEAKVIAPKA MVRKKLVSLA KKVSKKVRGR 420 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G021900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571446.1 | 0.0 | probable transcription factor At4g00610 | ||||
TrEMBL | A0A2K2CXI3 | 0.0 | A0A2K2CXI3_BRADI; Uncharacterized protein | ||||
TrEMBL | I1I1A8 | 0.0 | I1I1A8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16140.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00250.1 | 3e-07 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Brast03G021900.1.p |