PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G018100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 713aa    MW: 77295.8 Da    PI: 6.3527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G018100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-152468147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Brast03G018100.1.p 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                        78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
PfamPF002491.4E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-82464IPR009057Homeodomain-like
CDDcd001671.02E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEMNSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAINNG TSPGEAHDID IPPPRPKRKP NCPYPRKGCL SSDTPTREVP  120
NDKSTKSNIS LTNSNAQTAG NAALQKLQGK ESSSCSEVLN LFRDAPSASF SSVNKSSSNH  180
GALMEIEATK TEIKDMTTMD GTSVSIDMEK DVKDINDQEM ERLNRIHMSA KYDHPHDDCL  240
DNSRQHVKLK PKSVEITYTD QHPARASHNQ MDRTGATGVP VIGTEGSPAD QTNDQGGVAK  300
GNMNCLHPTL AVDPKFDSSS TAQPITHNYA AFAPMMQCQC NQDAYKSSVN MSSTFSSMLV  360
STLLSNPAVH AAARLAASYW PSADTPVDPN QESPDDNAQG RHIGSPPSMA SIVAATVAAA  420
SAWWATQGLL PLFAPPMAFP FVPVPSASFP IADVQRASEN CPVDCTPKEC QVAQKQNKPE  480
AVVVVASSQS DESGNGEVSL HTEIKISSTD KAEITPATGA DTSDAFGNKK KQDRSSCGSN  540
TPSSSDVEAE HVPEKQDQVN EQEQQASCNN PSAGDTNHRR FRSIASTSES WKEVSEEGRM  600
AFDALFSRGK LPQSFSPPQA EGSKAVSKGE QSEATPVTVD LNKSASIIDH ELDTSVGPIA  660
SLPIELSHLN MKSRRTGFKP YKRCSVEAKE NRVPASDEVG TKRIRLDSEA ST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G018100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573469.10.0protein CCA1
RefseqXP_010234382.10.0protein CCA1
RefseqXP_010234383.10.0protein CCA1
RefseqXP_010234384.10.0protein CCA1
TrEMBLI1I1F40.0I1I1F4_BRADI; Uncharacterized protein
STRINGBRADI3G16515.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-40circadian clock associated 1