PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G011700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 338aa    MW: 36179.1 Da    PI: 9.9566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14102146347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Brast03G011700.1.p 102 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 146
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96895151IPR017930Myb domain
SuperFamilySSF466891.22E-1796151IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1898150IPR006447Myb domain, plants
SMARTSM007171.4E-1199149IPR001005SANT/Myb domain
CDDcd001672.76E-10102147No hitNo description
Gene3DG3DSA:1.10.10.603.3E-12102145IPR009057Homeodomain-like
PfamPF002492.0E-12102146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPQDSRPPGM RLFGVTIAPA PAPAPDPPDH RDPSPNPNPP VALREDVMRK CKSMGNLAAL  60
ASASASGDAG GAAAADGYLS DGGLLQSSGK RRRAQERKKA VPWTEEEHRT FLAGLEKLGK  120
GDWRGIAKNF VTTRTPTQVA SHAQKYFLRQ TNPNKKKRRS SLFDMMTGDL SPAPNCPILP  180
PTMAKLHEMV AMTKQLQNSS LEGVSSSNVA NLASQVARDL PPPVPSFKAT NVDTSLVKMN  240
HMECFSRTHF SFRQIPMIAE GTSSTSITPT ANITAPAFQA NITAFPIPQS DHPSPPSPPK  300
ADHPEENKDL ELTVAPPSQQ TMTNISSQNV VGVIQVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G011700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519470.0JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318074.10.0transcription factor MYBS2 isoform X1
TrEMBLI1I1N20.0I1I1N2_BRADI; Uncharacterized protein
STRINGBRADI3G17170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-37MYB_related family protein