PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G008700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 25425.9 Da PI: 7.5606 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.1e-18 | 19 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+rW +eE+ ++vda ++G + Wk+I +++g +Rt+ q++s+ qky Brast03G008700.1.p 19 RNRWKPEEHNRFVDALSMFGRD-WKKIEAHVG-TRTAIQLRSHAQKY 63 89******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-10 | 14 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.121 | 14 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-15 | 15 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.9E-15 | 18 | 66 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-12 | 18 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-14 | 19 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-9 | 21 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDRIDETKPA PGTKPKQRRN RWKPEEHNRF VDALSMFGRD WKKIEAHVGT RTAIQLRSHA 60 QKYFEKALKM GVTGLPPPRP KRKRKNSMPV PQQQQQPAQG SSSAGQPQCL PPPGDNSFMG 120 TPSFSSEMSM ALEWAGSSTG STSLASAAVA PPPSSLPEVK TMLPVPGDEA AMDPWDTIMQ 180 EIKDIGLAID MDVDMDMTIF PSITPAGVSE CGSPPPHHGV PGDWCGTNLP SPYL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G008700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236464.1 | 1e-117 | protein REVEILLE 8-like | ||||
Swissprot | Q54IF9 | 3e-23 | MYBG_DICDI; Myb-like protein G | ||||
TrEMBL | A0A0E0FGG7 | 3e-32 | A0A0E0FGG7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WKV8 | 3e-32 | A2WKV8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G04110.1 | 5e-33 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 2e-19 | circadian clock associated 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G008700.1.p |