PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G002700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 13927 Da PI: 11.4766 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.2 | 6.6e-16 | 21 | 68 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +G+r ++ +grW AeIrdp + + r++lg+++ta Aa a++aa ++++g Brast03G002700.1.p 21 RGIRKRP-WGRWGAEIRDPAK---KGRVWLGTYDTAHLAALAYDAAVRRIRG 68 9******.**********843...59***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.273 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-29 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 20 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-10 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 21 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-26 | 21 | 76 | No hit | No description |
PRINTS | PR00367 | 1.1E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MAPKSKSGSA SAAGNRDLRL RGIRKRPWGR WGAEIRDPAK KGRVWLGTYD TAHLAALAYD 60 AAVRRIRGLH AKTNFPLALH PPPAAVQQEV ALRSASSVGS LTEALASLEL TTTPPRVLGL 120 DLNFSPPAEI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 20 | 80 | 6 | 67 | ATERF1 |
3gcc_A | 1e-19 | 20 | 80 | 6 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G002700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024980585.1 | 1e-28 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 3e-25 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A103XLX1 | 2e-27 | A0A103XLX1_CYNCS; AP2/ERF domain-containing protein | ||||
STRING | XP_010441914.1 | 2e-26 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 6e-18 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G002700.1.p |