PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G379700.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 826aa MW: 93659.6 Da PI: 5.6061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G379700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	79	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA + GF v+++ks+ + + g + + +vC+k+g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++leHnH l+p Brast02G379700.2.p 79 NFYKRYALRSGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVSLEHNHGLNP 163 6***************9998.6777************9999.....999******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	79	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-26	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.371	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0041	557	584	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.3E-5	559	578	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MEVDSAPVEE ELAFAAKQHD DDDDDGEDVS PGSKELVAMV EAAAESIELE VAADRAAPDG 60 DDRTPRDGMV FKSYEEVLNF YKRYALRSGF GVCVKKSSFT KAGLCRRLVL VCNKWGNGKE 120 DACYQARPTA KTNCQATVVA RLWGDGLLHL TDVSLEHNHG LNPSAARFLR CYKTLPSGMS 180 KDLVVRAARG ECSTSGDTEV PMFDDWGRLK IREGDVQAIN GFFGEMQAKQ PNFFYVMDFY 240 VEGNLRSVLW ADARSREAYQ YFSDAIWVDT TCLRKKFDVP LVLFLGVNHH GQLVLLGCGL 300 LSDESTESFL WLFKSWLTCM KGQLPNAIIT DECVAIKAAV REVFPKTRHR ISDWHIVRSI 360 SEKLGELPEY ESIKTELDAI IYDSLKDDEF ESRWKNSIDR FGLQDNEWII FLYENRHLWV 420 PSFLKDALWA GLSVNHRENP GAFFDDSVSR ETTLVSFLSS YMILVQNKYK MEQQDDFESL 480 SSGRVLVSKF PMEEQLSKIY TLNMFVKFQD ELKSTMQCQV QLDGSTSSFI VIDLAEPGRE 540 MVNKKYEVVH CMETNRMECN CGLFQFSGIV CRHALSVLKW QQVYDIPPCY VLNRWRSDFK 600 QLHVLDNPLK DLVSSNHVER YDHISLQCLR LVEIGMVSDE KYQHALKLIS DMKRTLLDDN 660 LCRELEHKLS PSERAIANGD SHAHPGSSEA GPSKKRRGRP PKKSKEISME SVSNQYGNKD 720 SLLVSSDASQ KDAFHSTSTA SNLGTHVRPH GVDDLMEEVN PNELSFESRY GVQSSHPHHY 780 GDQLHPGNTL QFGQQTPSAE QSRGVQWVYP NIFQDDQAPY GRRTS*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MEVDSAPVEE ELAFAAKQHD DDDDDGEDVS PGSKELVAMV EAAAESIELE VAADRAAPDG  60
DDRTPRDGMV FKSYEEVLNF YKRYALRSGF GVCVKKSSFT KAGLCRRLVL VCNKWGNGKE  120
DACYQARPTA KTNCQATVVA RLWGDGLLHL TDVSLEHNHG LNPSAARFLR CYKTLPSGMS  180
KDLVVRAARG ECSTSGDTEV PMFDDWGRLK IREGDVQAIN GFFGEMQAKQ PNFFYVMDFY  240
VEGNLRSVLW ADARSREAYQ YFSDAIWVDT TCLRKKFDVP LVLFLGVNHH GQLVLLGCGL  300
LSDESTESFL WLFKSWLTCM KGQLPNAIIT DECVAIKAAV REVFPKTRHR ISDWHIVRSI  360
SEKLGELPEY ESIKTELDAI IYDSLKDDEF ESRWKNSIDR FGLQDNEWII FLYENRHLWV  420
PSFLKDALWA GLSVNHRENP GAFFDDSVSR ETTLVSFLSS YMILVQNKYK MEQQDDFESL  480
SSGRVLVSKF PMEEQLSKIY TLNMFVKFQD ELKSTMQCQV QLDGSTSSFI VIDLAEPGRE  540
MVNKKYEVVH CMETNRMECN CGLFQFSGIV CRHALSVLKW QQVYDIPPCY VLNRWRSDFK  600
QLHVLDNPLK DLVSSNHVER YDHISLQCLR LVEIGMVSDE KYQHALKLIS DMKRTLLDDN  660
LCRELEHKLS PSERAIANGD SHAHPGSSEA GPSKKRRGRP PKKSKEISME SVSNQYGNKD  720
SLLVSSDASQ KDAFHSTSTA SNLGTHVRPH GVDDLMEEVN PNELSFESRY GVQSSHPHHY  780
GDQLHPGNTL QFGQQTPSAE QSRGVQWVYP NIFQDDQAPY GRRTS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G379700.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559160.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010235331.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_024312384.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	I1GKZ2	0.0	I1GKZ2_BRADI; Uncharacterized protein
STRING	BRADI1G01990.2	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-120	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Brast02G379700.2.p