PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G325400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 336aa    MW: 36878.3 Da    PI: 7.3408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G325400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51251552128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pG+rFhPtdeelv++yL++kv+gk+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  Brast02G325400.1.p  25 LPGYRFHPTDEELVTFYLRRKVAGKPLSI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRP 114
                         69***************************.99***************445556889*********************************** PP

                 NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+    +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Brast02G325400.1.p 115 IYSAaaasSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 155
                         ***988888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-5723181IPR003441NAC domain
PROSITE profilePS5100555.78624181IPR003441NAC domain
PfamPF023658.0E-2526155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEKVKNNGEV VLGARDGEED DAAVLPGYRF HPTDEELVTF YLRRKVAGKP LSIEVIREMD  60
IYKHDPWDLP KASTVGGEKE WYFFCLRGRK YRNSIRPNRV TGSGFWKATG IDRPIYSAAA  120
ASSGESIGLK KSLVYYRGSA GKGTKTDWMM HEFRLPAAAA ANASPSMQEA EVWTICRIFR  180
RNVTYRKQQT WRPPPPAAAS TAVAADSSSN TAGSFESSDG GGDDYMAPAA TTAPPCIIPH  240
QQQQHNGTLH LGAANGGFFG QHFQGQWNSV PPPAPPLPDQ KPLNPASAPI AFHQNDHSLA  300
AANDFYKVEG YLEEIARMME VTDPHPAAVY DYRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-512618719171NO APICAL MERISTEM PROTEIN
1ut4_B4e-512618719171NO APICAL MERISTEM PROTEIN
1ut7_A4e-512618719171NO APICAL MERISTEM PROTEIN
1ut7_B4e-512618719171NO APICAL MERISTEM PROTEIN
3swm_A4e-512618722174NAC domain-containing protein 19
3swm_B4e-512618722174NAC domain-containing protein 19
3swm_C4e-512618722174NAC domain-containing protein 19
3swm_D4e-512618722174NAC domain-containing protein 19
3swp_A4e-512618722174NAC domain-containing protein 19
3swp_B4e-512618722174NAC domain-containing protein 19
3swp_C4e-512618722174NAC domain-containing protein 19
3swp_D4e-512618722174NAC domain-containing protein 19
4dul_A4e-512618719171NAC domain-containing protein 19
4dul_B4e-512618719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G325400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604321e-171AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559373.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0Q3GPL50.0A0A0Q3GPL5_BRADI; Uncharacterized protein
STRINGBRADI1G06970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-81NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]