PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G319200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 374aa    MW: 38441.7 Da    PI: 8.0996
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G319200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.5e-31114167255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rF++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Brast02G319200.1.p 114 PRMRWTTALHARFMHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 167
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.49E-15111167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28112167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23114167IPR006447Myb domain, plants
PfamPF002491.3E-7115166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLQRSLPNLS LRISPPAVSS ATSLSDPSAK PPQLAEPNAE GSGEVGFFAN PSPGSGSGAE  60
PPGLSLGLGT SSTAPAEASG RHGQHLQGAQ GCASFKRAGA SRAPGGSKRS VRAPRMRWTT  120
ALHARFMHAV QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKG TDRSPPIATG  180
EAQLQQQQRT ATGIEMAMDA AAAGGRGAAM LPCDVDMAAG MICSVLPGAA ASAPPAATTS  240
SAARFLCASA AAPLAALVPS PPPPSIAPRR TDLAPVVLEK GVVIVDSLHR CQKLNFSAVL  300
QDTQAAREEV TCRLPMGVHG SAEAISTSPA SSSPSLASFE LLADDTCAPN LEISLGRHDW  360
GMEHPEELSL KYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G319200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559393.10.0uncharacterized protein LOC100840568
TrEMBLA0A0Q3GPU80.0A0A0Q3GPU8_BRADI; Uncharacterized protein
STRINGOS03T0766500-011e-122(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.29e-40G2-like family protein