PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G287800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 545aa    MW: 58566.3 Da    PI: 4.9297
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G287800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.32.5e-1061755443374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + Ll+c +a ++ +  la + La+++  a+ +g p +R+a+yf  ALa+rla    + ++ +++ + ++  ++e +  +k++++++P+ kf
  Brast02G287800.1.p 175 QSLLACSRAAAA-NSGLAATELAKVRAVATDSGGPAERVAFYFSDALARRLAC--GGAASPVTAAD-ARVATDELTLCYKTLNDACPYSKF 261
                         7899***98877.677888889******************************8..44444444444.44668999999************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  rL++fA+ lgv+fef + 
  Brast02G287800.1.p 262 AHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRIRISGVPSPFLGpePAASLAATSARLRDFAKLLGVDFEFVP- 351
                         *******************************************887769********98888899*************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         + + +++l+ +++ ++p+E++aVn++lql++ll   ++++++ ++vL+l ksl P vv++ e e+++n++ F++rf++al+yy  +f+sl+
  Brast02G287800.1.p 352 LLRPVDELDQSDFLIEPDEVVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLHPAVVTLGEYEVSLNRAGFVDRFANALSYYRLVFESLD 439
                         599******************************...66666777*********************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.l 360
                         + ++r+s+er+++Er ++g++i+ +v   ega+r+ r+   ++W+  +e +GF+pv+ls++a++qa+lll +++ +  y++ e + +++ l
  Brast02G287800.1.p 440 VAMARDSQERVMMERCMFGERIRRAVGPgEGADRTDRMAGSSEWQTLMEWCGFEPVRLSNYAMSQADLLLWNYDsKYKYSLVELQPAFLsL 530
                         **************************8549999*****************************************77789999****9999* PP

                GRAS 361 gWkdrpLvsvSaWr 374
                          W++rpL++vSaWr
  Brast02G287800.1.p 531 AWEKRPLLTVSAWR 544
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819952.59E-61657No hitNo description
SuperFamilySSF819952.59E-697162No hitNo description
PROSITE profilePS5098555.691147522IPR005202Transcription factor GRAS
PfamPF035148.5E-104175544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQHHQ QRHHHHHLAP PMPSAPAPPH AQIPASLPYG  60
GTSAAWPQAE HFFSDVFGAS APDGVFSDLA TAADFDSDGW MESLIGDAPV FQDSDLDRLI  120
FTTPPPPGPA PAEAAAAAAQ AENAPASLPL AAATTPVACS PASSSDTSCS APILQSLLAC  180
SRAAAANSGL AATELAKVRA VATDSGGPAE RVAFYFSDAL ARRLACGGAA SPVTAADARV  240
ATDELTLCYK TLNDACPYSK FAHLTANQAI LEATGAATKI HIVDFGIVQG IQWAALLQAL  300
ATRPEGKPSR IRISGVPSPF LGPEPAASLA ATSARLRDFA KLLGVDFEFV PLLRPVDELD  360
QSDFLIEPDE VVAVNFMLQL YHLLGDSDEP VRRVLRLAKS LHPAVVTLGE YEVSLNRAGF  420
VDRFANALSY YRLVFESLDV AMARDSQERV MMERCMFGER IRRAVGPGEG ADRTDRMAGS  480
SEWQTLMEWC GFEPVRLSNY AMSQADLLLW NYDSKYKYSL VELQPAFLSL AWEKRPLLTV  540
SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01705441375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G287800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560467.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLI1GNV60.0I1GNV6_BRADI; Uncharacterized protein
STRINGBRADI1G10330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-127GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]