PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G284900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 226aa MW: 23499.2 Da PI: 8.2225 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 80.1 | 2.7e-25 | 11 | 69 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRrev 57 + +Y+eCl+NhAa+lG++a DGC+E++p++ + g l CaACgCHRnFHR+ Brast02G284900.1.p 11 REVYRECLRNHAAKLGTYASDGCCEYTPADADAGAgagaGGLLLCAACGCHRNFHRKAF 69 568*************************9766655333244589************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-21 | 13 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.0E-19 | 14 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-8 | 14 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.619 | 14 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.21E-15 | 97 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 98 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-26 | 111 | 172 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEQLQQQERA REVYRECLRN HAAKLGTYAS DGCCEYTPAD ADAGAGAGAG GLLLCAACGC 60 HRNFHRKAFL DATAPMLHPA PGAPPGYGNM HMAMSAGDVG GSGSGSGSGR RRTRTKFTEE 120 QKARMLRFAE RLGWRMPKRE PGRAPGDDEV ARFCREIGVA RQVFKVWMHN HKVGGSGGAG 180 GGGGAQTSSS TTRGGGGGLG AMSTAAMGSG DGEDDEEVRG NEMCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-17 | 110 | 175 | 17 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G284900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC091532 | 2e-86 | AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 2e-86 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 2e-86 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560584.1 | 1e-113 | zinc-finger homeodomain protein 11 | ||||
Swissprot | A2XLF4 | 1e-85 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 1e-85 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | I1GNY8 | 1e-112 | I1GNY8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G10610.1 | 1e-113 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 8e-27 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G284900.1.p |