PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G278200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 613aa    MW: 64798 Da    PI: 4.8006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G278200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.91.5e-1402296081374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevs 88 
                         lv++Ll+cAeav++++l++a+al++++  la+++g +m+++aayf eALa+r++r        ++p+++s  +  ++++a+ l   f+e +
  Brast02G278200.1.p 229 LVHALLACAEAVQQENLSAAEALVKQIPLLAASQGGAMRKVAAYFGEALARRVFR--------FRPQPDS--SLLDAAFADLLhahFYESC 309
                         689****************************************************........5555555..34444444444456***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++
  Brast02G278200.1.p 310 PYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYR 400
                         ******************************************************************************************* PP

                GRAS 180 vlvakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                          lva +l+dle+ +L+ +         E++aVn+v+++hrll+++++le+    vL +v+ ++P++v+vveqea+hns+sFl+rf+e+l+y
  Brast02G278200.1.p 401 GLVAATLADLEPFMLQPEGeedpneePEVIAVNSVFEMHRLLSQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHY 487
                         ***************544444557789***********************....************************************* PP

                GRAS 264 ysalfdsleak.........lpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                         ys++fdsle               +    +++++++++lgr+i+nvvaceg er+erhetl++Wr rl++aGF++v+l+++a+kqa++ll+
  Brast02G278200.1.p 488 YSTMFDSLEGAgsgqseispG---AaagATDQVMSEVYLGRQICNVVACEGPERTERHETLGQWRGRLGQAGFETVHLGSNAYKQASTLLA 575
                         ********7775666665322...1466899************************************************************ PP

                GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++ +dgy+vee++g+l+lgW++rpL+++SaWr
  Brast02G278200.1.p 576 LFAgGDGYKVEEKDGCLTLGWHTRPLIATSAWR 608
                         ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.2E-3036117No hitNo description
PfamPF120411.2E-3436111IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.202203587IPR005202Transcription factor GRAS
PfamPF035145.3E-138229608IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MKREYQDAGG SRGGGDMGPS KDKMMVAAPA EEEDVDELLA ALGYKVRASD MADVAQKLEQ  60
LEMAMGMGGV GAGAAPDDGF AAHLATDTVH YNPSDLSSWV ESMLSELNAP PPPLPPAPQA  120
PRLSCNSSTV TGGGGYFDLP PSVDSSSSTY ALKPIPSPVV TPAEPSADPA REPKRMRTGG  180
GSTSSSSSSS SSLGGGGTMS SVVEAAPPAA NAPALPVVVV DTQEAGIRLV HALLACAEAV  240
QQENLSAAEA LVKQIPLLAA SQGGAMRKVA AYFGEALARR VFRFRPQPDS SLLDAAFADL  300
LHAHFYESCP YLKFAHFTAN QAILEAFAGC RRVHVVDFGI KQGMQWPALL QALALRPGGP  360
PSFRLTGVGP PQPDETDALQ QVGWKLAQFA HTIRVDFQYR GLVAATLADL EPFMLQPEGE  420
EDPNEEPEVI AVNSVFEMHR LLSQPGALEK VLGTVRAVRP RIVTVVEQEA NHNSGSFLDR  480
FTESLHYYST MFDSLEGAGS GQSEISPGAA AGATDQVMSE VYLGRQICNV VACEGPERTE  540
RHETLGQWRG RLGQAGFETV HLGSNAYKQA STLLALFAGG DGYKVEEKDG CLTLGWHTRP  600
LIATSAWRMA AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6423660726378Protein SCARECROW
5b3h_A1e-6423660725377Protein SCARECROW
5b3h_D1e-6423660725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G278200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9596660.0KF959666.1 Psathyrostachys huashanica DELLA protein (Rht-B1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560731.10.0DELLA protein SLN1
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLI1GP390.0I1GP39_BRADI; Uncharacterized protein
STRINGBRADI1G11090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]