PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G260100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 409aa    MW: 45906.6 Da    PI: 9.7761
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G260100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.72.1e-23134178145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+
  Brast02G260100.1.p 134 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 178
                         79****************************************997 PP
2QLQ56.77.1e-2075110237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  Brast02G260100.1.p  75 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 110
                         8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-1174110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-1475108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.76275110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.151134178IPR014977WRC domain
PfamPF088791.5E-19135177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MELGQVLGFT VPPPKEGDLG LIKRSNFNHV ASYPSPFLDE QKMLRFSKAA HTLPSGMDFG  60
RPNEQRFLLS RTKMPFTPSQ WMELEHQALI YKYLNAKAPI PSSLLISISK SFISSSNKMA  120
WRPVYQGFTN TDSDPEPGRC RRTDGKKWRC SKEAMAEHKY CERHINRNRH RSRKPVENQT  180
RKTAKETPAA GSLSSPVSQG NSKKAKASNE LKPGSDSYWT DSLNRAMVSK ARANKPEEGN  240
SVPLLNSTNH TLSLLSQLKQ HNKQGKLSPT VDSESISSNT VLKPWERSNQ QASKDISCTQ  300
LHDRECLQSV LQNFSLHKND KIESHKNKAS NHVPVTSTFY SCPEGSGNNR LTSDMTRVQE  360
DCISSSWEMP QGGPLGEILT NSKNTENLTN KCESRSYGWL LNLEDHEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G260100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561362.10.0growth-regulating factor 9 isoform X1
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLI1GPM80.0I1GPM8_BRADI; Uncharacterized protein
STRINGBRADI1G12650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-34growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]