PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G257200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 353aa MW: 38446.9 Da PI: 6.8552

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G257200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.9	3.2e-19	51	126	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt e+++Liea+++++e+ + + ++W++v +++++ g++rs++qC+++w+nl ++ykk++++e+++ + s + Brast02G257200.1.p 51 WTLPETMLLIEAKKRVHEERHPADQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAHEQQQ--HAASYW 126 ********************************************************************95..344455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.991	43	107	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	44	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.08E-6	46	117	IPR009057	Homeodomain-like
Pfam	PF13837	6.8E-14	49	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDMKQVGSGV VTERSGQQQE GEDASRDMSA AAAGAMTLAT TTAREYRRGN WTLPETMLLI 60 EAKKRVHEER HPADQGLARW RWVEDYCWRA GCRRSQNQCN DRWDNLMRDY KKVRAHEQQQ 120 HAASYWAMAR AERKERCLPS NLLREIYDAM GEIVERRRSS LSCYAGSGSG TGAGVLYLGP 180 PLTAANVADF PAIMQASPLA QVPPRPFEQG THCSASESPE RKRLRQSLDG QPGSSTPAAA 240 SAGMHCGGDQ RLEEPLPQEE DDESSDDGEE DALGGAIGRC AAILSGALES REAAEERRHG 300 ELMAVEERRS AARRARREAR EQCVAGLAAA VSQLAGSMLA LAAKRKGPAA PK*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDMKQVGSGV VTERSGQQQE GEDASRDMSA AAAGAMTLAT TTAREYRRGN WTLPETMLLI  60
EAKKRVHEER HPADQGLARW RWVEDYCWRA GCRRSQNQCN DRWDNLMRDY KKVRAHEQQQ  120
HAASYWAMAR AERKERCLPS NLLREIYDAM GEIVERRRSS LSCYAGSGSG TGAGVLYLGP  180
PLTAANVADF PAIMQASPLA QVPPRPFEQG THCSASESPE RKRLRQSLDG QPGSSTPAAA  240
SAGMHCGGDQ RLEEPLPQEE DDESSDDGEE DALGGAIGRC AAILSGALES REAAEERRHG  300
ELMAVEERRS AARRARREAR EQCVAGLAAA VSQLAGSMLA LAAKRKGPAA PK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G257200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083602	5e-82	BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229516.1	1e-177	trihelix transcription factor ASR3
TrEMBL	I1GPQ8	1e-176	I1GPQ8_BRADI; Uncharacterized protein
STRING	BRADI1G12900.1	1e-177	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-43	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Brast02G257200.1.p