PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G235800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 369aa MW: 41427.4 Da PI: 6.9725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G235800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.8	6.6e-21	34	116	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ +++p +fa++++g s ++ l+ +sg+sW++k+ + ++++++l++GWkeFv+a+++++gD ++Fk++grs+f v +f+ Brast02G235800.1.p 34 DFTES-MSIPDRFAKNFNGH--ISEEVNLKYPSGKSWSIKV-ANDTGDEVILRSGWKEFVSAHRIEQGDCLLFKYSGRSSF--DVLMFD 116 44444.9*****888666..6779***********.4556666***************************999..777776 PP
2	B3	37.2	5.3e-12	270	356	12	99
HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++++ ++ +fa +++g +++++l+ s +W ++ +++ +r + + GW++Fv++ngL +D+++F+l + + + +v+v+r+ Brast02G235800.1.p 270 RTSIVGISSEFAGKYMGAV--GREIVLKRaGSRGRWHARF-VSGDYCRGLSGCGWRDFVRDNGLLPKDVCLFELLDGaPRPTATVHVLRR 356 44678999*****7664..4589999956669**.5677777789********************77555999999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-24	22	120	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-25	22	120	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.96	24	118	IPR003340	B3 DNA binding domain
CDD	cd10017	4.55E-21	25	116	No hit	No description
SMART	SM01019	2.1E-13	27	118	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.0E-18	28	115	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-14	250	355	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-14	250	355	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.64E-10	254	355	No hit	No description
SMART	SM01019	0.0021	256	357	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.714	259	357	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-9	271	356	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MGKNCELCTE WQEHWYWSHM ADDDKHFFKL MVGDFTESMS IPDRFAKNFN GHISEEVNLK 60 YPSGKSWSIK VANDTGDEVI LRSGWKEFVS AHRIEQGDCL LFKYSGRSSF DVLMFDSNGC 120 EKKSPHPVKN HGRETAQNSA GAGDHHQVLS KTRDRQPHSP PMDSEGTGLQ MTLHKDTGKS 180 IFRACQRDLC HDIEQAHQDK EDCVDVGLDD DGEAASAKTG YYFCKNGPVA EFHLTEEDKE 240 EISSVHVPVE RSNPVFVQVM HTGHVRNTTR TSIVGISSEF AGKYMGAVGR EIVLKRAGSR 300 GRWHARFVSG DYCRGLSGCG WRDFVRDNGL LPKDVCLFEL LDGAPRPTAT VHVLRRLHGR 360 FVRMHGAN*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MGKNCELCTE WQEHWYWSHM ADDDKHFFKL MVGDFTESMS IPDRFAKNFN GHISEEVNLK  60
YPSGKSWSIK VANDTGDEVI LRSGWKEFVS AHRIEQGDCL LFKYSGRSSF DVLMFDSNGC  120
EKKSPHPVKN HGRETAQNSA GAGDHHQVLS KTRDRQPHSP PMDSEGTGLQ MTLHKDTGKS  180
IFRACQRDLC HDIEQAHQDK EDCVDVGLDD DGEAASAKTG YYFCKNGPVA EFHLTEEDKE  240
EISSVHVPVE RSNPVFVQVM HTGHVRNTTR TSIVGISSEF AGKYMGAVGR EIVLKRAGSR  300
GRWHARFVSG DYCRGLSGCG WRDFVRDNGL LPKDVCLFEL LDGAPRPTAT VHVLRRLHGR  360
FVRMHGAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G235800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189910.1	1e-154	B3 domain-containing protein Os03g0622200-like
Swissprot	Q10GM3	1e-129	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A0Q3KSV3	1e-180	A0A0Q3KSV3_BRADI; Uncharacterized protein
STRING	EMT09780	1e-159	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	8e-31	B3 family protein

Link Out ? help Back to Top
Phytozome	Brast02G235800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]