PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G235700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 321aa    MW: 36378.8 Da    PI: 9.0219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G235700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-1825113299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fkv+     + + r+++p  f+++++gk    + ++l++++g +++v++  r + ++ v+++GW+ Fv+a++Lk gDf++Fk+d+ s  e+
  Brast02G235700.1.p  25 FKVM--IGEF-RERITIPDAFVKRFSGK--FATNIKLKSPNGCTFDVQV--RISFDELVIESGWNAFVSAHDLKMGDFLTFKYDRIS--EM 106
                         5555..3444.457***********988..5668***************..*******************************98744..45 PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f+ 
  Brast02G235700.1.p 107 KVLIFDP 113
                         8999875 PP
2B342.21.5e-132333201299
                         HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         + + + + +k+a+ +       e+ t++l+    ++W v++++    r ks +  l kGW+eFv++n+L+ gD+++Fkl ++++ ++ v++
  Brast02G235700.1.p 233 TPCTMEICRKYADLYlpF----EDETVKLRR-GCKRWYVRCCIsnsyRPKSAK-RLLKGWREFVHDNNLQLGDICLFKLLKKNKYTMDVHI 317
                         557777888888766432....333677554.55*******876654555555.4556********************9999999999999 PP

                         E-S CS
                  B3  97 frk 99 
                         +rk
  Brast02G235700.1.p 318 IRK 320
                         986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2118116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2120121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90121114IPR003340B3 DNA binding domain
CDDcd100175.64E-2223112No hitNo description
SMARTSM010192.0E-1224114IPR003340B3 DNA binding domain
PfamPF023629.0E-1624112IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-18214319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-20214319IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.014225319IPR003340B3 DNA binding domain
CDDcd100176.35E-15235319No hitNo description
PfamPF023621.6E-11235320IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068262320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRKPCERPKE NGVGGDAEER PSSFFKVMIG EFRERITIPD AFVKRFSGKF ATNIKLKSPN  60
GCTFDVQVRI SFDELVIESG WNAFVSAHDL KMGDFLTFKY DRISEMKVLI FDPSGCEKTL  120
PCLPMKNATH GQEPDDIASH FQNIPMNSPQ IEISNQGNNT VDISSSSSPS RSSGYVSSSE  180
DDLELLSPQR LILCGGARPS GSQNKRLKEK IQAIHSEIPI YGCVIRKSSI QGTPCTMEIC  240
RKYADLYLPF EDETVKLRRG CKRWYVRCCI SNSYRPKSAK RLLKGWREFV HDNNLQLGDI  300
CLFKLLKKNK YTMDVHIIRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G235700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312591.11e-134putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0Q3RMG90.0A0A0Q3RMG9_BRADI; Uncharacterized protein
STRINGTRIUR3_12005-P12e-93(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-16B3 family protein