PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G233800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 309aa    MW: 33397.8 Da    PI: 4.6584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G233800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-112352751055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Brast02G233800.1.p 235 RKRRERINERLKVLQNLVPNG-----TKVNISTMLEEAVQYVKFLQ 275
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.792225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14228291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13230287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-12234279No hitNo description
PfamPF000102.8E-8235275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESGGVIAEA GWGSLDISHQ AEESEMMEQL LGTFPSNGEE NQQELPWSVH SNAAYNYIHC  60
YGSSNAYSST SNNSVGSLIL DLPSEYGGFY VSDSNGIGSA LDLNMVQEQG AAQFMEAILN  120
PSYGNGDSSC EDLGDSSMNL LDSIGTSNKR NCQGQGKIAD QTRGRKCSRK SEPKRAKKVT  180
HREGEDGTIA ATKGQSLSCC TSENDSNGSQ ESPVAANTSG KCSQSTTDPQ SLYARKRRER  240
INERLKVLQN LVPNGTKVNI STMLEEAVQY VKFLQLQIKL LSSDDMWMYA PIAYNGMNIG  300
VDLNLSHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G233800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559675.10.0transcription factor bHLH84
TrEMBLI1GQA20.0I1GQA2_BRADI; Uncharacterized protein
STRINGBRADI1G14600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-49bHLH family protein