PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G229300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 331aa    MW: 36786 Da    PI: 7.5829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G229300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111030323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++C+ksF++  +L  H+ +H
  Brast02G229300.1.p 10 CKHCKKSFPSGNSLGGHMALH 30
                        ******************998 PP
2zf-C2H2157e-0579100223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ C ksF + + L  H++ H
  Brast02G229300.1.p  79 ECQLCFKSFASCDALSMHMKIH 100
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.26E-5632No hitNo description
SMARTSM003555.1830IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-8831IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM003550.2278100IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.68178100IPR007087Zinc finger, C2H2
PfamPF139126.2E-478101IPR007087Zinc finger, C2H2
SuperFamilySSF576678.67E-879100No hitNo description
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-480107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-8233260No hitNo description
SMARTSM003550.096238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242238265IPR007087Zinc finger, C2H2
PfamPF139123.3E-7238260IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPPRGRKHWC KHCKKSFPSG NSLGGHMALH RNMHKKRLSG SPSIDSEGYD LRGSRWRTRV  60
LSDSTFSDDE PWTLFPKTEC QLCFKSFASC DALSMHMKIH LRCEKKMVVE HKASTGDGVH  120
NVTVSDALMK KKRTRRMVLD TAPTPEMMTY GIEEVGAAHI LVMLSEDNGR YAASVDHDKD  180
CEMDGNLVYH MPMSEMNLNS PAHGPFGDDE LMEPQTSSSY EEVKFVSLSE VIKATTSHEC  240
KLCGKVFLSG RALGGHMKFH SVADRKRASN VPESAVTQPC KQLLELDHES LVLSLPAPNI  300
CNYSSTTPKS EPDPSWVTSS LQSERMLGVL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G229300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232783.10.0uncharacterized protein LOC104582938
TrEMBLI1GQD70.0I1GQD7_BRADI; Uncharacterized protein
STRINGBRADI1G14950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-06C2H2-like zinc finger protein