PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G211100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 269aa MW: 29585.3 Da PI: 6.5081

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G211100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ede+lv +++++G g W + +++ g++R++k+c++rw++yl Brast02G211100.1.p 14 RGAWTAMEDEILVSYINRHGEGKWGSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ Brast02G211100.1.p 67 RGNISDDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.082	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.68E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.04E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.921	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	65	115	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.85E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGRKPCCSKE GLNRGAWTAM EDEILVSYIN RHGEGKWGSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEEELIVR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKRVLLTA 120 RGNHQQQLLQ QASTPKPPHS SSVDAPPDLP DTSSSPIRTK ATRCTAMLPA HHDPVADQVV 180 QEMTTAHIEQ QRGLAGDDDL SIELDFDGIE LGFLLSPWRD GAVDDRHELG DCGTTHEADL 240 EELLGLGSDG AQSHAGVPSL GGLELPWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G211100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB191459	2e-46	AB191459.1 Triticum aestivum Tamyb10-B1 gene, complete cds.
GenBank	AB599722	2e-46	AB599722.1 Triticum aestivum Tamyb10-B1 gene for myb-related protein, complete cds.
GenBank	HE996776	2e-46	HE996776.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_66711.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561552.1	1e-176	transcription repressor MYB6
Swissprot	P10290	3e-61	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A0Q3HEZ4	1e-175	A0A0Q3HEZ4_BRADI; Uncharacterized protein
STRING	Si038905m	9e-83	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-62	MYB family protein

Link Out ? help Back to Top
Phytozome	Brast02G211100.1.p

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]