PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G193300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 355aa    MW: 38544.2 Da    PI: 5.0615
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G193300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573106.71.8e-3368167297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg +++f+++h+q +
  Brast02G193300.1.p  68 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRGSGASFTFRSPHEQAV 158
                         79*************************9977778***************************************8889************** PP

              DUF573  89 felskkiWg 97 
                         fe+++ iW+
  Brast02G193300.1.p 159 FEIARNIWR 167
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-3069166IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLPMVDDPSA AAGAAASSSF PDADAYGNGD SEDIDFPVDP IPNPPFSSSA TVPAPAPAAA  60
AVGERRPLFQ RLWTEEDEIV ILRAFAEFTA QRGTAFASHQ YDTEPFYEEM RRRLQLDFSK  120
SQLAEKLRRL KRKYRNCVER LRGSGASFTF RSPHEQAVFE IARNIWRPSS DKHGRDPSAG  180
DSDDDATITA TNAGANGDAK SPSSSRAQRR VRRRRTADCT ADATEAPQPY TPSTMPVKTE  240
DALPAFFPQV SMDGAEHVVP PAAQPAANTE SSVLTPLFKE MVRAMLGMGG CASPLGLGAK  300
VPEPPSAILG IPMEGEKWRQ QRILELEVYL RRIDLLQDEV KSALEELKAT PAAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G193300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228580.10.0probable transcription factor At3g04930
TrEMBLI1H5500.0I1H550_BRADI; Uncharacterized protein
STRINGBRADI1G61477.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-34DNA-binding storekeeper protein-related transcriptional regulator