PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G162800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 210aa MW: 23375.9 Da PI: 8.0142 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.3 | 1e-20 | 33 | 94 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K++++ +fpr YYrCt++ +Cp++k+++++ ++dp + ++tY +eH ++ Brast02G162800.1.p 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKdHSDPPLYQVTYYNEHSCN 94 8***************************99999*******875267*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-23 | 19 | 94 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-22 | 26 | 94 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.847 | 27 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-30 | 32 | 95 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-24 | 33 | 93 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSPVPSPHQS HLLGHGTRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY 60 KDNMNCPATK QIQQKDHSDP PLYQVTYYNE HSCNSAFLAL TPTEFQLQTA SGKAVSICFD 120 SSGAQEPAAN ASSPSSSAAP RGTPSENKNQ TLRLSEAHSS WGPSVIEQKQ VCTELQSCST 180 ECQDAYSAGT ISEDIDAGRF GSIRFFHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-14 | 33 | 93 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G162800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094513 | 0.0 | FP094513.1 Phyllostachys edulis cDNA clone: bphyst007p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558024.1 | 1e-156 | probable WRKY transcription factor 54 | ||||
TrEMBL | I1H610 | 1e-155 | I1H610_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G63910.1 | 1e-156 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-18 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G162800.1.p |