PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G158900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 393aa    MW: 42394.6 Da    PI: 9.209
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G158900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-10116172155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +   g krk  + g +  +++Aa+a++ a++k++g
  Brast02G158900.1.p 116 SRYRGVTRHRWTGRYEAHLWDnTCRrEGqKRKGRQGG-YEKEDKAARAHDLAALKYWG 172
                         79*******************5555444666888866.5555**************98 PP
2AP250.35.8e-16217267356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a++k++ge
  Brast02G158900.1.p 217 YRGVTRHHNHGRWQARIGRVAG---NKDLYLGTFATQEEAAEAYDIAALKFRGE 267
                         9***************988532...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.56E-18116180No hitNo description
PfamPF008471.3E-7116172IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-13116181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-12117181IPR001471AP2/ERF domain
SMARTSM003803.4E-17117186IPR001471AP2/ERF domain
PROSITE profilePS5103217.28117180IPR001471AP2/ERF domain
PRINTSPR003679.3E-7118129IPR001471AP2/ERF domain
CDDcd000184.04E-24215276No hitNo description
SuperFamilySSF541714.25E-18215275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-19216274IPR001471AP2/ERF domain
SMARTSM003801.1E-32216280IPR001471AP2/ERF domain
PROSITE profilePS5103219.243216274IPR001471AP2/ERF domain
PfamPF008473.8E-11217267IPR001471AP2/ERF domain
PRINTSPR003679.3E-7256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSPPTNGAMM LASFPPPMGG MSFDALFFPF DGFSAGDFFA LNGAPPPLAA DPTRLLLPSS  60
CLGHGYGSGS SSSAPDAITI AAPTSSGLTI VPAGGSSSVP APPVPLVPSI VTQRTSRYRG  120
VTRHRWTGRY EAHLWDNTCR REGQKRKGRQ GGYEKEDKAA RAHDLAALKY WGANATTNFP  180
KESYIREIKE MQNMSRQDLV ASLRRKSSGF SRGASMYRGV TRHHNHGRWQ ARIGRVAGNK  240
DLYLGTFATQ EEAAEAYDIA ALKFRGENAV TNFEPSRYNL EAIAHMDLPI NGPRTRLESH  300
KPAAPEEAQG QIAPASAPPF SQQPSNNNLQ SYLLDSLLQL PPCEPLQALP VPASYSFREP  360
SWPFGDGEQK VQLDSKLEVA GGLLQLANSA AN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G158900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098391e-149AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561687.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1H6510.0I1H651_BRADI; Uncharacterized protein
STRINGBRADI1G64240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.19e-88AINTEGUMENTA-like 5