PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G135000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 272aa    MW: 28743.3 Da    PI: 7.8241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G135000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000551581961154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +R +++ +++  L++l+ +      +K + a++L +A  +I+sL
  Brast02G135000.1.p 158 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRSL 196
                         6889999**********999.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.89147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8158211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-5158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MWNCSAPASL LLPFSDEYVK CESSTSSTGT AGFDKILATD YDHLCHRMSL PPPSFQSLPA  60
PPALFGTRSS ESYFGVGDSS TYNGPAFMQF SYTQPTPAAN HLVRWTAAGV EPMSGEGSSF  120
RGSKRLKTTA AAATTQGPQH RLQCRAKPRN QAMKAPCKRS QKLGDKITAL QQLVSPYGKT  180
DTASVLHEAA ACIRSLHDQI QILAAPYPGL SSSPSSSSQD AGEEPAAAGL RQRGLCLMPL  240
SPAVASLVSD AARGHGHAHT DMEEDAWFGA L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G135000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228790.11e-172uncharacterized protein LOC100826940 isoform X2
TrEMBLA0A2K2DTQ31e-171A0A2K2DTQ3_BRADI; Uncharacterized protein
STRINGMLOC_43396.11e-107(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-21bHLH family protein