PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G124600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 575aa    MW: 60418.7 Da    PI: 5.2037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G124600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.1e-921285261373
                GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetsekn.......sseel 78 
                         l +lL+++Aea+s   ++ ela+ +L rl+++as++ d    +m+Rlaa+f+ AL+  l +s   l+k  ++++ +  +        s++l
  Brast02G124600.1.p 128 LLHLLMAAAEALSGphKSRELARVILVRLKDMASSTSDaaasNMERLAAHFADALQGLLDGSH-PLSKHHQAQAMAAASssplhhsASDVL 217
                         579**********8557777************88887666669****************9944.333333333333222235667799999 PP

                GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167
                         +a+++++++sP++kf+h+taNqaIleav+g++rvH++D+d+ +G+QW++L+qa++sRp   +pp+lRiT+v +   g +++++e g+rLa 
  Brast02G124600.1.p 218 TAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDLAEGIQWASLMQAMTSRPdgVSPPHLRITAVTRGGGGGARAVQEAGRRLAA 308
                         **********************************************************6666***********7777************** PP

                GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse...... 251
                         fA ++g pf+f     ++ e +++ + r+ +gE+l+ n++l+       +v  +     ++L  +  l +kvv+vve+e + +++      
  Brast02G124600.1.p 309 FAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMAALGAKVVTVVEEEGEASDKeaggee 398
                         ************99999**********************99665554.333333347899*******************99977669999* PP

                GRAS 252 .....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakq 336
                               F+ rf+e l+ ysa+ dslea++p++s+ r  vEr++lg++i  +v+ + +     +    + W e+++ +GFk+vpls ++ +q
  Brast02G124600.1.p 399 daaagGFVGRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILGPNIAGAVSRAYRGgTDGESGGRGGWGEWMRGSGFKAVPLSCFNHSQ 489
                         ****9*************************************************999845667778899********************** PP

                GRAS 337 aklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                         a+lll  ++ dgy+vee   + +vlgWk r+L+s+S+W
  Brast02G124600.1.p 490 ARLLLGLFN-DGYTVEETrPNKIVLGWKARRLLSASVW 526
                         *********.******87367788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.719102507IPR005202Transcription factor GRAS
PfamPF035141.8E-89128526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDVTMEDVVG DLEISGCGSS TAASSPSSSS LVDDDMGLYA WNALSPVADW GPFCSDDGGQ  60
DLHGLIESML SDDALAGADP ASLFHHQAGP CYSNGSDPSS TTTTNPGTPV HDDPAPQAEC  120
SPEKGLRLLH LLMAAAEALS GPHKSRELAR VILVRLKDMA SSTSDAAASN MERLAAHFAD  180
ALQGLLDGSH PLSKHHQAQA MAAASSSPLH HSASDVLTAF QMLQDMSPYM KFGHFTANQA  240
ILEAVAGDRR VHVVDYDLAE GIQWASLMQA MTSRPDGVSP PHLRITAVTR GGGGGARAVQ  300
EAGRRLAAFA GSIGQPFSFG HCRLDSDERF RPATVRMVKG ETLVANCILH QAAATTTVRR  360
PTGSVASFLT GMAALGAKVV TVVEEEGEAS DKEAGGEEDA AAGGFVGRFM EELHRYSAVW  420
DSLEAGFPTQ SRVRGLVERV ILGPNIAGAV SRAYRGGTDG ESGGRGGWGE WMRGSGFKAV  480
PLSCFNHSQA RLLLGLFNDG YTVEETRPNK IVLGWKARRL LSASVWAPPP LSVPSSPADA  540
VVFQPMGMAP ASGFGRTEFD YIDSFLVEPA YAIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4913552826380Protein SCARECROW
5b3h_A1e-4913552825379Protein SCARECROW
5b3h_D1e-4913552825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G124600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151677.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-151NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A3B6JJ260.0A0A3B6JJ26_WHEAT; Uncharacterized protein
STRINGBRADI1G67340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-82GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]