PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G103100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 296aa    MW: 32718.6 Da    PI: 6.5124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G103100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12127175355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Brast02G103100.1.p 127 NNHSLAERFRREKINERMKHLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 175
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-11122179No hitNo description
SuperFamilySSF474594.32E-18122191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.847124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18124191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9127175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYSPPCTASG NDDEQGFTAS ANPIALLDHA MDFDEHMLFP MHNVGMQDGV QFYNPPSGTE  60
LSRNMSMEKR LKGGKRKGSG EGSSSMHSQE GNGAVSKREV NSEKAGDAES NREDYVHIRA  120
KRGQATNNHS LAERFRREKI NERMKHLQDL VPGCNKITGK AMMLDEIINY VQSLQRQVEF  180
LSMKLSAVSP ELNCDLDLQD ILCPQDARSA FPGYGPRLSN VHPNLYRASQ HLSRPELYGS  240
IPNPANVHLA RTAQLSAFPQ RSVVWDEELR SIGSVAFPSD AGTSRLENSD PMKVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G103100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558437.10.0transcription factor bHLH74
TrEMBLA0A2K2DU680.0A0A2K2DU68_BRADI; Uncharacterized protein
STRINGBRADI1G69190.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-47bHLH family protein