PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G084900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 328aa    MW: 35045.9 Da    PI: 6.507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G084900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-112522921055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+YIk +q
  Brast02G084900.1.p 252 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVHYIKFMQ 292
                         9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-14245305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-13247301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-12248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-12251296No hitNo description
PfamPF000102.0E-8252292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESSEASWHC SFDPSVAAED SEAMARLLGV HGCCFGGDEQ IKQPAPASCM YWPGHEADHD  60
QYYGAAVPPY YLHEQQHASA GGYQHGHAGG YYDGVATMGG AGEFFVAPDH EQMAGDPGLG  120
FMVDLNIQFE DPLDEGDMSS GCKRKLGDTG AGSKKKARST ATTPVQRKGK GCAQPRKKGS  180
KGGSSRGGVQ QEESNVQSSS NNYLSDDDGS LEMTSCSNVS SASKKTSSSR GGGAKARAGR  240
GAATDPQSLY ARKRREKINE RLKVLQNLVP NGTKVDISTM LEEAVHYIKF MQLQIKLLSS  300
DDMWMFAPIA YNGFNVGLDL KIAPPQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G084900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313352.10.0transcription factor bHLH76
SwissprotQ7XHI91e-48BH084_ARATH; Transcription factor bHLH84
TrEMBLI1H8E60.0I1H8E6_BRADI; Uncharacterized protein
STRINGBRADI1G70860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-44bHLH family protein